AI SummaryFHIRy is a Python package that converts FHIR healthcare data into pandas DataFrames, enabling data scientists and healthcare developers to perform analytics, machine learning, and AI on standardized health records. It's ideal for researchers and engineers working with health data who need quick, programmatic access to structured clinical datasets.
Install
Copy this and paste it into Claude Code, Cursor, or any AI assistant:
I want to add the "fhiry — Copilot Instructions" prompt rules to my project. Repository: https://github.com/dermatologist/fhiry Please read the repo to find the rules/prompt file, then: 1. Download it to the correct location (.cursorrules, .windsurfrules, .github/prompts/, or project root — based on the file type) 2. If there's an existing rules file, merge the new rules in rather than overwriting 3. Confirm what was added
Description
FHIR to pandas dataframe for data analytics, AI and ML!
Project Overview
FHIRy is a Python package that converts FHIR (Fast Healthcare Interoperability Resources) bundles and NDJSON files into pandas DataFrames for health data analytics, machine learning, and AI applications. It supports FHIR server search, BigQuery integration, and LLM-based natural language queries.
Development Environment Setup
• Python Version: Requires Python 3.10 or higher (tested on 3.10, 3.11, and 3.12) • Package Manager: Uses uv for fast, reliable dependency management • Setup Commands: `bash uv sync # Install dependencies from pyproject.toml `
Project Structure
` src/fhiry/ # Main source code ├── fhiry.py # Core FHIR Bundle processor ├── fhirndjson.py # NDJSON file processor ├── fhirsearch.py # FHIR server search API integration ├── bqsearch.py # BigQuery FHIR dataset queries ├── flattenfhir.py # FHIR resource flattening logic ├── parallel.py # Parallel processing utilities ├── base_fhiry.py # Base class for FHIR processors └── main.py # CLI entry point tests/ # Test suite with pytest docs/ # MkDocs documentation examples/ # Usage examples `
Python Style
• Formatter: Ruff (enforced via pre-commit hooks) • Line Length: 120 characters maximum • Type Hints: Required for all function signatures (enforced by mypy) • Docstrings: Use Google-style docstrings for classes and public methods • Import Organization: Handled automatically by ruff (isort-compatible)
Discussion
Health Signals
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Works With
Any AI assistant that accepts custom rules or system prompts