Skill

smiles_comprehensive_analysis

by InternScience

AI Summary

This booster enables comprehensive SMILES molecular analysis for cheminformatics tasks, including validation, descriptor computation, and ADMET prediction. It's useful for chemists, drug developers, and AI assistants working with molecular structures.

Install

# Add to your project root as SKILL.md
curl -o SKILL.md "https://raw.githubusercontent.com/InternScience/scp/main/skills/smiles_comprehensive_analysis/SKILL.md"

Description

SMILES Comprehensive Analysis - Comprehensive SMILES analysis: validate, convert name, compute all molecular descriptors, and predict ADMET. Use this skill for cheminformatics tasks involving is valid smiles ChemicalStructureAnalyzer calculate mol basic info pred molecule admet. Combines 4 tools from 3 SCP server(s).

Tools Used

• is_valid_smiles from server-2 (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/2/DrugSDA-Tool • ChemicalStructureAnalyzer from server-28 (sse) - https://scp.intern-ai.org.cn/api/v1/mcp/28/InternAgent • calculate_mol_basic_info from server-2 (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/2/DrugSDA-Tool • pred_molecule_admet from server-3 (streamable-http) - https://scp.intern-ai.org.cn/api/v1/mcp/3/DrugSDA-Model

Usage Example

> Note: Replace <YOUR_SCP_HUB_API_KEY> with your own SCP Hub API Key. You can obtain one from the SCP Platform. `python import asyncio import json from mcp import ClientSession from mcp.client.streamable_http import streamablehttp_client from mcp.client.sse import sse_client SERVERS = { "server-2": "https://scp.intern-ai.org.cn/api/v1/mcp/2/DrugSDA-Tool", "server-28": "https://scp.intern-ai.org.cn/api/v1/mcp/28/InternAgent", "server-3": "https://scp.intern-ai.org.cn/api/v1/mcp/3/DrugSDA-Model" } async def connect(url, transport_type): transport = streamablehttp_client(url=url, headers={"SCP-HUB-API-KEY": "<YOUR_SCP_HUB_API_KEY>"}) read, write, _ = await transport.__aenter__() ctx = ClientSession(read, write) session = await ctx.__aenter__() await session.initialize() return session, ctx, transport def parse(result): try: if hasattr(result, 'content') and result.content: c = result.content[0] if hasattr(c, 'text'): try: return json.loads(c.text) except: return c.text return str(result) except: return str(result) async def main(): # Connect to required servers sessions = {} sessions["server-2"], _, _ = await connect("https://scp.intern-ai.org.cn/api/v1/mcp/2/DrugSDA-Tool", "streamable-http") sessions["server-28"], _, _ = await connect("https://scp.intern-ai.org.cn/api/v1/mcp/28/InternAgent", "sse") sessions["server-3"], _, _ = await connect("https://scp.intern-ai.org.cn/api/v1/mcp/3/DrugSDA-Model", "streamable-http") # Execute workflow steps # Step 1: Validate SMILES result_1 = await sessions["server-2"].call_tool("is_valid_smiles", arguments={}) data_1 = parse(result_1) print(f"Step 1 result: {json.dumps(data_1, indent=2, ensure_ascii=False)[:500]}") # Step 2: Analyze structure result_2 = await sessions["server-28"].call_tool("ChemicalStructureAnalyzer", arguments={}) data_2 = parse(result_2) print(f"Step 2 result: {json.dumps(data_2, indent=2, ensure_ascii=False)[:500]}") # Step 3: Calculate molecular descriptors result_3 = await sessions["server-2"].call_tool("calculate_mol_basic_info", arguments={}) data_3 = parse(result_3) print(f"Step 3 result: {json.dumps(data_3, indent=2, ensure_ascii=False)[:500]}") # Step 4: Predict ADMET result_4 = await sessions["server-3"].call_tool("pred_molecule_admet", arguments={}) data_4 = parse(result_4) print(f"Step 4 result: {json.dumps(data_4, indent=2, ensure_ascii=False)[:500]}") # Cleanup print("Workflow complete!") if __name__ == "__main__": asyncio.run(main()) `

SMILES Comprehensive Analysis

Discipline: Cheminformatics | Tools Used: 4 | Servers: 3

Description

Comprehensive SMILES analysis: validate, convert name, compute all molecular descriptors, and predict ADMET.

Quality Score

C

Acceptable

68/100

Standard Compliance45
Documentation Quality55
Usefulness72
Maintenance Signal100
Community Signal90
Scored Today

GitHub Signals

Stars108
Forks6
Issues0
Updated2d ago
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Trust & Transparency

Open Source — MIT

Source code publicly auditable

Verified Open Source

Hosted on GitHub — publicly auditable

Actively Maintained

Last commit 2d ago

108 stars — Growing Community

6 forks

My Fox Den

Community Rating

Works With

Claude Code